Dr. Carsten Kroger

Dr. Carsten Kroger

Assistant Professor, Microbiology

3531896 1414

Publications and Further Research Outputs

  • Rainford PF, Velasco-Berrelleza V, Mogre A, Dorman CJ, Harris S, Kröger C and Stepney S, Parameterising a Computational model of Supercoiling in Plasmid DNA with Biophysics modeling, ALIFE 2024: Proceedings of the 2024 Artificial Life Conference, MIT Press, 2024, pp9Conference Paper, 2024, DOI
  • Felsl A, Brokatzky D, Kröger C, Heermann R, Fuchs TM., Hierarchic regulation of a metabolic pathway: H-NS, CRP, and SsrB control myo-inositol utilization by Salmonella enterica., Microbiology spectrum, 12, (1), 2024, pe0272423Journal Article, 2024, DOI
  • Kumwenda B, Canals R, Predeus AV, Zhu X, Kröger C, Pulford C, Wenner N, Lora LL, Li Y, Owen SV, Everett D, Hokamp K, Heyderman RS, Ashton PM, Gordon MA, Msefula CL, Hinton JCD, Salmonella enterica serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage., Microlife, 2024Journal Article, 2024, DOI
  • Hamrock FJ, Ryan D, Shaibah A, Ershova AS, Mogre A, Sulimani AA, Ben Taarit S, Reichardt S, Hokamp K, Westermann AJ and Kröger C, Global analysis of the RNA"RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO, Nucleic Acids Research, 2024Journal Article, 2024, DOI
  • Faulkner Rainford P, Mogre A, Velasco-Berrelleza V, Dorman CJ, Harris S, Kröger C, Stepney S, A Pi-calculus Model of Supercoiling DNA Circuits, ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference, MIT Press, 2023Conference Paper, 2023
  • Kröger C, Lerminiaux NA, Ershova AS, MacKenzie KD, Kirzinger MW, Märtlbauer E, Perry BJ, Cameron ADS, Schauer K., Plasmid-encoded lactose metabolism and mobilized colistin resistance (mcr-9) genes in Salmonella enterica serovars isolated from dairy facilities in the 1980s., Microbial genomics, 9, (11), 2023Journal Article, 2023, DOI
  • Shaban L, Ershova AS, Hamrock FJ, Shaibah A, Sulimani MM, Amin RA, Russell JN, Ravichandran R, Schaffer K, Martins M, Cameron ADS, Kröger C, Draft Genome Sequence and Annotation of Acinetobacter soli AS15, Isolated from an Irish Hospital, Microbiology Resource Announcement, 2021Journal Article, 2021, DOI
  • Owen SV, Canals R, Wenner N, Hammarlöf DL, Kröger C and Hinton JCD, A window into lysogeny: Revealing temperate phage biology with transcriptomics, Microbial Genomics, 2020Journal Article, 2020, DOI
  • Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD., Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580., PLoS biology, 17, (1), 2019, pe3000059Journal Article, 2019, DOI
  • Kröger C, Schauer K, Clerkin S, Maertlbauer E and Fleming AB, Draft Genome Sequence and Annotation of Acinetobacter junii MHI21018, Isolated from Bovine Colostrum, Microbiology Resource Announcements, 2019Journal Article, 2019, DOI
  • Pulford CV, Wenner N, Redway ML, Rodwell EV, Webster HJ, Escudero R, Kröger C, Canals R, Rowe W, Lopez J, Hall N, Rowley PD, Timofte D, Harrison RA, Baker KS and Hinton JCD, The diversity, evolution and ecology of Salmonella in venomous snakes, PLoS Neglected Tropical Diseases, 2019Journal Article, 2019, DOI
  • Hammarlöf DL, Kröger C, Owen SV, Canals R, Lacharme-Lora L, Wenner N, Schager AE, Wells TJ, Henderson IR, Wigley P, Hokamp K, Feasey NA, Gordon MA, Hinton JCD., Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella., Proceedings of the National Academy of Sciences of the United States of America, 2018Journal Article, 2018, DOI
  • Kröger C, MacKenzie KD, Alshabib EY, Kirzinger MWB, Suchan DM, Chao TC, Akulova V, Miranda-CasoLuengo AA, Monzon VA, Conway T, Sivasankaran SK, Hinton JCD, Hokamp K, Cameron ADS., The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978., Nucleic Acids Research, 2018Journal Article, 2018, DOI
  • Kröger C, Rothhardt JE, Brokatzky D, Felsl A, Kary SC, Heermann R, Fuchs TM, The small RNA RssR regulates myo-inositol degradation by Salmonella enterica, Scientific Reports, 2018Journal Article, 2018, DOI , URL
  • Perry BJ, Fitzgerald SF, Kröger C, Cameron AD, Whole-Genome Sequence and Annotation of Salmonella enterica subsp. enterica Serovar Enteritidis Phage Type 8 Strain EN1660, Genome Announcements, 2017Journal Article, 2017, DOI
  • Colgan AM, Cameron AD, Kröger C, If it transcribes, we can sequence it: mining the complexities of host-pathogen-environment interactions using RNA-seq, Current Opinion in Microbiology, 9, (36), 2017, p37 - 46Journal Article, 2017, DOI
  • Cameron DS, SC Dillon, C Kröger, L Beran, CJ Dorman, Broad scale redistribution of mRNA abundance and transcriptional machinery in response to growth rate in Salmonella enterica serovar Typhimurium, Microbial Genomics, 3, 2017, p1 - 10Journal Article, 2017, DOI , URL , TARA - Full Text
  • Miranda-CasoLuengo AA, Kary SC, Erhardt M and Kröger C, Small RNA, Big Effect: Control of Flagellin Production., Trends in Microbiology, 2017Journal Article, 2017, DOI , URL
  • Colgan AM, Kröger C, Diard M, Hardt WD, Puente JL, Sivasankaran SK, Hokamp K, Hinton JC, The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium., PLoS Genetics, 12, (8), 2016, pe1006258Journal Article, 2016, DOI
  • Kröger C, Kary SC, Schauer K, Cameron AD., Genetic Regulation of Virulence and Antibiotic Resistance in Acinetobacter baumannii, Genes (Basel), 2016Journal Article, 2016, DOI
  • MacKenzie KD, Wang Y, Shivak DJ, Wong CS, Hoffman LJ, Lam S, Kröger C, Cameron AD, Townsend HG, Köster W, White AP, Bistable Expression of CsgD in Salmonella enterica Serovar Typhimurium Connects Virulence to Persistence, Infection and immunity, 83, (6), 2015, p2312 - 2326Journal Article, 2015, DOI
  • Srikumar S, Kröger C, Hébrard M, Colgan A, Owen SV, Sivasankaran SK, Cameron AD, Hokamp K, Hinton JC, RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium, PLoS Pathogens, 2015Journal Article, 2015, DOI
  • Rothhardt JE, Kröger C, Broadley SP, Fuchs TM, The orphan regulator ReiD of Salmonella enterica is essential for myo‐inositol utilization, Molecular Microbiology, 94, (3), 2014, p700 - 712Journal Article, 2014, DOI
  • Cameron ADS, Kröger C, Quinn HJ, Scally IK, Daly AJ, Kary SC, Dorman CJ, Transmission of an oxygen availability signal at the Salmonella enterica serovar Typhimurium fis promoter, PLoS One, 8, (12), 2013, pe84382Journal Article, 2013, DOI , TARA - Full Text
  • Kröger C, Colgan A, Srikumar S, Händler K, Sivasankaran SK, Hammarlöf DL, Canals R, Grissom JE, Conway T, Hokamp K, Hinton JC, An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium., Cell host & microbe, 14, (6), 2013, p683-95Journal Article, 2013, DOI , TARA - Full Text
  • Hébrard M, Kröger C, Srikumar S, Colgan A, Händler K, Hinton JC, sRNAs and the virulence of Salmonella enterica serovar Typhimurium, RNA biology, 9, (4), 2012, p437 - 445Journal Article, 2012, DOI
  • Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard M, Händler K, Colgan A, Leekitcharoenphon P, Langridge GC, Lohan AJ, Loftus B, Lucchini S, Ussery DW, Dorman CJ, Thomson NR, Vogel J, Hinton JC, The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium., Proceedings of the National Academy of Sciences of the United States of America, 109, (20), 2012, pE1277-86Journal Article, 2012, DOI
  • Hébrard M, Kröger C, Sivasankaran SK, Händler K, Hinton JC, The challenge of relating gene expression to the virulence of Salmonella enterica serovar Typhimurium., Current opinion in biotechnology, 2011Journal Article, 2011, DOI
  • Kröger C, Srikumar S, Ellwart J, Fuchs TM, Bistability in myo-inositol utilization by Salmonella enterica serovar Typhimurium., Journal of bacteriology, 193, (6), 2011, p1427-35Journal Article, 2011, DOI
  • Kröger C, Stolz J, Fuchs TM, myo-Inositol transport by Salmonella enterica serovar Typhimurium., Microbiology (Reading, England), 156, (Pt 1), 2010, p128-38Journal Article, 2010, DOI
  • Kröger C, Fuchs TM, Characterization of the myo-inositol utilization island of Salmonella enterica serovar Typhimurium., Journal of bacteriology, 191, (2), 2009, p545-54Journal Article, 2009, DOI
  • Kreutzenbeck P, Kröger C, Lausberg F, Blaudeck N, Sprenger GA, Freudl R, Escherichia coli twin arginine (Tat) mutant translocases possessing relaxed signal peptide recognition specificities., The Journal of biological chemistry, 282, (11), 2007, p7903-11Journal Article, 2007, DOI

Research Expertise

Microbiology, Genetics,

Recognition

  • IRC Ulysses Awardee 2021 2021