Professor Trevor Hodkinson

• Brian R. Murphy & Fiona M. Doohan & Trevor R. Hodkinson, Fungal root endophytes of a wild barley species increase yield in a nutrient-stressed barley cultivar, Symbiosis, 2015, 1-7Journal Article, 2015, DOI
• Teerawatananon, A., Boontia, V., Chantarasuwan, B., Hodkinson, T.R., Sungkaew, S. , A taxonomic revision of the genus Dimeria (Poaceae: Panicoideae) in Thailand, Phytotaxa, 186, (3), 2014, p137-147Journal Article, 2014, DOI
• Stout JC, Duffy KJ, Egan PA, Harbourne M, Hodkinson TR, Genetic diversity and floral width variation in introduced and native populations of a long-lived woody perennial., AoB PLANTS, 7, (plu087), 2015, p1 - 11Journal Article, 2015, DOI
• Murphy BR, Doohan FM, Hodkinson TR, Native fungal microorganisms enhance important agronomic traits in barley, TCD Journal of Postgraduate Research, 14, 2015, p20-Journal Article, 2015
• Murphy BR, Doohan FM, Hodkinson TR, Media Manipulations and the Culture of Beneficial Fungal Root Endophytes, International Journal of Biology, 7, 2015, p95 - 102Journal Article, 2015, DOI , URL , TARA - Full Text
• Murphy BR, Doohan FM, Hodkinson TR, Persistent fungal root endophytes isolated from a wild barley species suppress seed-borne infections in a barley cultivar, BioControl, 60, (2), 2015, p281-292Journal Article, 2015, DOI
• Jones MB, Finnan J, Hodkinson TR, Morphological and physiological traits for higher biomass production in perennial rhizomatous grasses grown on marginal land, GCB Bioenergy, 7, (2), 2015, p375-385Journal Article, 2015, DOI
• Murphy BR, Nieto LM, Doohan FM, Hodkinson TR, Fungal endophytes enhance agronomically important traits in severely drought-stressed barley, Journal of Agronomy and Crop Science, 201, (6), 2015, p419-427Journal Article, 2015, DOI
• Murphy BR, Nieto LM, Doohan FM, Hodkinson TR, Profundae diversitas: the uncharted genetic diversity in a newly studied group of fungal root endophytes, Mycology, 2015, 139-150Journal Article, 2015, DOI
• Murphy BR, Nieto LM, Doohan FM, Hodkinson TR, The Difference between Life and Death: Fungal Endophytes Improve Survival and Increase Biomass in Multiply-Stressed Barley., Global Journal of Science Frontier Research, 15, (5), 2015, p1 - 9Journal Article, 2015, URL
• Murphy BR, Doohan FM, Hodkinson TR, Supression of vertically transmitted infections of barley by fungal root endophytes is linked to the soil properties of the isolate origin, IOBC-WPRS Bulletin, 15, 2016, p31 - 36Journal Article, 2016
• Barth S, Jones M, Hodkinson TR, Finnan J, Klaas M, Wang Z-Y , Grasslands for forage and bioenergy use: traits and biotechnological implications, Grassland Science in Europe, 19, 2014, p438 - 449Journal Article, 2014, URL
• Perdereau A, Klaas M, Barth S.and Hodkinson TR, Plastid genome sequencing reveals biogeographical structure and extensive population genetic variation in wild populations of Phalaris arundinacea L. in north-western Europe. , GCB Bioenergy, 9, (1), 2017, p46 - 56Journal Article, 2017, DOI , TARA - Full Text
• McEvoy A, O'Regan, F, Fleming CC, Moreland BP, Pollock JA, McGuinness BW and Hodkinson TR, Bleeding canker of horse chestnut (Aesculus hippocastanum) in Ireland: incidence, severity and characterization using DNA sequences and real-time PCR, Plant Pathology, 2016Journal Article, 2016, DOI
• Barth S, Jankowska MJ , Hodkinson TR, Vellani T and Klaas M, Variation in sequences containing microsatellite motifs in the perennial biomass and forage grass, Phalaris arundinacea (Poaceae), BMC Research Notes, (9), 2016, p184-Journal Article, 2016, URL , TARA - Full Text
• Boonsuk B, Chantaranothai P, Hodkinson TR, A taxonomic revision of the genus Digitaria (Panicoideae: Poaceae) in mainland Southeast Asia, Phytotaxa, 246, (4), 2016, p248 - 280Journal Article, 2016, URL
• Extent of Crown Rust Infection in a Perennial Ryegrass (Lolium perenne L.) Association Mapping Population. in, Roldán-Ruiz I, Baert J, Reheul D. , Switzerland. , Breeding in a World of Scarcity. Proceedings of the 2015 Meeting of the Section "Forage Crops and Amenity Grasses" of Eucarpia., Switzerland, Springer International Publishing, 2016, pp47 - 52, [Arojju SK, Milbourne D, Conaghan P, Hodkinson TR, Barth S]Book Chapter, 2016, DOI , URL
• Murphy BR, Doohan FM, Hodkinson TR, A seed dressing combining fungal endophyte spores and fungicides improves seedling survival and early growth in barley and oat, Symbiosis, 2017, p69 - 76Journal Article, 2017, DOI , URL
• Arojju SK, Barth S, Milbourne D, Conaghan P, Velmurugan J, Hodkinson TR, Byrne SL, Markers associated with heading and aftermath heading in perennial ryegrass full-sib families, BMC Plant Biology, 16, 2016, p1 - 16Journal Article, 2016, DOI , URL , TARA - Full Text
• Origins and taxonomy of Miscanthus in, editor(s)Jones MB and Walsh M , Miscanthus - for Energy and Fibre, UK, James and James, 2001, pp1 - 9, [Scally L, Hodkinson TR, Jones MB]Book Chapter, 2001
• The classification of Phyllostachys (Poaceae) in, editor(s)Chapman GP , The Bamboos. Linnaean Society Symposium Series 19, 1997, pp95 - 106, [Renvoize SA, Hodkinson TR]Book Chapter, 1997, URL
• Abbott J, Douglas GC, Hodkinson TR, Improving the efficiency in vegetative propagation of selected mature Irish ash trees (Fraxinus excelsior L.) for farm forestry, Agricultural Research Forum, 2003, pp63Conference Paper, 2003, URL
• Harbourne M, Hodkinson TR, Waldren S, Douglas GC, The genetic characterisation of European common ash (Fraxinus excelsior L.) in Irish populations, Agricultural Research Forum, 2003, pp65Conference Paper, 2003, URL
• Martin J, Douglas G, Hodkinson TR, Kelleher C, Kelly DL, Analysing Irish oaks by chloroplast DNA analysis, Biofor, Proceedings of Application of Biotechnology to Forest Genetics, 99, 2000, pp134 - 138Conference Paper, 2000
• Mina-Vargas AM, McKeown PC, Flanagan NS, Debouck DG, Kilian A, Hodkinson TR, Spillane C, Origin of year-long bean (Phaseolus dumosus Macfady, Fabaceae) from reticulated hybridization events between multiple Phaseolus species, Annals of Botany, 2016, p957-969Journal Article, 2016, DOI , URL , TARA - Full Text
• Kelleher CT, Hodkinson TR, Kelly DL, Douglas GC, Characterisation of chloroplast DNA haplotypes to reveal the provenance and genetic structure of oaks in Ireland, Forest Ecology and Management, 189, 2004, p123 - 131Journal Article, 2004, DOI
• Kelleher CT, Kelly DL, Hodkinson TR, Species status, hybridisation and geographic distribution of Irish populations of Quercus petraea (Matt.) Liebl. and Q. robur L., Watsonia, 25, 2004, p83 - 97Journal Article, 2004, URL
• Stapleton CMA, Ní Chonghaile G, Hodkinson TR, Sarocalamus, a new Sino-Himalayan bamboo genus (Poaceae: Bambusoideae), Novon, 14, 2004, p245 - 349Journal Article, 2004, URL
• Salamin N., Chase MW, Hodkinson TR, Savolainen V, Assessing internal support with large phylogenetic DNA matrix, Molecular Phylogenetics and Evolution, 27, 2003, p528 - 539Journal Article, 2003, DOI
• Simpson DA, Furness CA, Hodkinson TR, Muthama Muasya A, Chase MW, Phylogenetic relationships in Cyperaceae subfamily Mapanioideae inferred from pollen and plastid DNA sequence data, American Journal of Botany, 90, 2003, p1071 - 1086Journal Article, 2003, URL
• Carolan JC, Hook IL, Walsh JJ, Hodkinson TR, Using AFLP for species differentiation and assessment of in vitro cultured Papaver bracteatum (section Oxytona), In Vitro Cell Development - Plant, 38, 2002, p300 - 307Journal Article, 2002, DOI
• Hodkinson TR, Chase MW, Lledo D, Salamin N, Renvoize SA, Phylogenetics of Miscanthus s.l., Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) using DNA sequences from the ITS nuclear ribosomal DNA and the plastid trnL-F regions, Journal of Plant Research, 115, 2002, p381 - 392Journal Article, 2002, DOI
• Hodkinson TR, Chase MW, Renvoize SA, Characterization of a genetic resource collection for Miscanthus (Saccharinae, Andropogoneae, Poaceae) using AFLP and ISSR PCR, Annals of Botany, 89, 2002, p627 - 636Journal Article, 2002, DOI
• Hodkinson TR, Chase MW, Takahashi C, Leitch IJ, Bennett MD, Renvoize SA, The use of DNA sequencing (ITS and trnL-F), AFLP and fluorescent in-situ hybridisation to study allopolyploid Miscanthus (Poaceae), American Journal of Botany, 89, 2002, p279 - 286Journal Article, 2002, URL
• Meade CV, Hodkinson TR, Chalermglin P, Chase MW, Parnell JA, Revision of Uvaria L. in Continental Southeast Asia: 2. Floral character Evolution in the Uvaria L. Group, Annonaceae Newsletter, 13, 2002, p29 - 32Journal Article, 2002
• Salamin N, Hodkinson TR, Savolainen V, Building supertrees: an empirical assessment using the grass family (Poaceae), Systematic Biology, 51, 2002, p134 - 150Journal Article, 2002, DOI
• Hodkinson TR, Chase MW, Renvoize SA, Genetic resources of Miscanthus, Aspects of Applied Biology, 65, 2001, p239 - 248Journal Article, 2001, URL
• Hodkinson TR, Renvoize SA, Nomenclature of Miscanthus xgiganteus, Kew Bulletin, 56, 2001, p757 - 758Journal Article, 2001, URL
• Scally L, Waldren S, Hodkinson TR, Jones MB, Molecular and morphological studies in Miscanthus, Aspects of Applied Biology, 65, 2001, p231 - 237Journal Article, 2001
• Hodkinson TR, Renvoize SA, Ní Chonghaile G, Stapleton CMA, Chase MW, A comparison of ITS nuclear rDNA sequence data and AFLP markers for phylogenetic studies in Phyllostachys (Bambusoideae, Poaceae), Journal of Plant Research, 113, 2000, p259 - 269Journal Article, 2000, DOI
• Reeves G, Francis D, Davies MS, Rogers HJ, Hodkinson TR, Genome size is negatively correlated with altitude in natural populations of Dactylis glomerata, Annals of Botany, 82, 1998, p99 - 105Journal Article, 1998, URL
• Hodkinson TR, Renvoize SA, Chase MW, Molecular systematics of Miscanthus, Aspects of Applied Biology, 49, 1997, p189 - 198Journal Article, 1997, URL
• Delêtre, M., Hodkinson, T.R., McKey, D., Perceptual selection and the unconscious selection of `volunteer" seedlings in clonally propagated crops: an example with African cassava (Manihot esculenta Crantz) using ethnobotany and population genetics, Genetic Resources and Crop Evolution, 64, (4), 2017, p665-680Journal Article, 2017, DOI
• Barth, S., McGrath, S.K., Arojju, S.K., Hodkinson, T.R., An Irish perennial ryegrass genetic resource collection clearly divides into two major gene pools, Plant Genetic Resources: Characterisation and Utilisation, 15, 2017, p269-278Journal Article, 2017, DOI
• Suwanphakdee, C., Hodkinson, T.R., Chantaranothai, P., New species and a reinstatement in Peperomia (Piperaceae) from Thailand, Kew Bulletin, 72, (1), 2017, p1Journal Article, 2017, DOI
• Zhao, D., Parnell, J.A.N., Hodkinson, T.R., Typification of names in the genus Camellia (Theaceae), Phytotaxa, 292, 2017, p171 - 179Journal Article, 2017
• Teerawatananon A, Marod D, Hodkinson TR, Sungkaew S, Chimonocalamus elegans, a new temperate woody bamboo species (Poaceae: Bambusoideae) from Doi Phu Kha National Park, Thailand, Phytotaxa, 302 , (1), 2017, p97 - 100Journal Article, 2017, DOI
• Suwanphakdee C, Simpson DA, Hodkinson TR, Chantaranothai P, Taxonomic notes on the genus Piper (Piperaceae), Nordic Journal of Botany, 34, (5), 2017, p605 - 618Journal Article, 2017, DOI , TARA - Full Text
• Pornpongrungrueng, P., Parnell, J.A.N., Hodkinson, T. & Chantaraonthai, P. , Phyllanthus kaweesakii (Phyllanthaceae), a new species from Thailand., Botany, 95, 2017, p567 - 577Journal Article, 2017, DOI
• Murphy BR, Hodkinson TR, Doohand FM, A fungal endophyte consortium counterbalances the negative effects of reduced nitrogen input on the yield of field-grown spring barley, Journal of Agricultural Science, 155, (8), 2017, p1324-1331Journal Article, 2017, DOI
• Estep, M.C. and McKain, M.R. and Diaz, D.V. and Zhong, J. and Hodge, J.G. and Hodkinson, T.R. and Layton, D.J. and Malcomber, S.T. and Pasquet, R. and Kellogg, E.A., Erratum: Allopolyploidy, diversification, and the Miocene grassland expansion (Proceedings of the National Academy of Sciences of the United States of America (2015) 111 (15149-15154)), Proceedings of the National Academy of Sciences of the United States of America, 113, (2), 2016, pE257Journal Article, 2016, DOI , URL
• Hodkinson, T.R. and Petrunenko, E. and Klaas, M. and MÃŒnnich, C. and Barth, S. and Shekhovtsov, S.V. and Peltek, S.E., New breeding collections of Miscanthus sinensis, M. Sacchariflorus and hybrids from primorsky krai, far eastern Russia, 2016, 105-118ppBook, 2016, DOI , URL
• Zhao, D., Parnell, J.A.N. & Hodkinson, T. R., Names of Assam tea: Their priority, typification and nomenclatural notes. , Taxon, 66, 2017, p1447 - 1455Journal Article, 2017, DOI
• FitzGerald A, Hodkinson TR, The diploid Festuca ovina subsp. ovina (Poaceae) confirmed cytologically for Ireland, New Journal of Botany, 7 , 2017, p182-183Journal Article, 2017, DOI
• Murphy BR, Doohan, FM, Hodkinson TR, From Concept to Commerce: Developing a Successful Fungal Endophyte Inoculant for Agricultural Crops, Journal of Fungi, 4, (24), 2018, p1 - 11Journal Article, 2018, URL , TARA - Full Text
• Hodkinson TR, Evolution and taxonomy of the grasses (Poaceae): a model family for the study of species-rich groups, Annual Plant Reviews, 1, 2018, p1 - 39Journal Article, 2018, DOI , URL
• Salamin N, Hodkinson TR, Savolainen V, Towards building the tree of life: a simulation study for all angiosperm genera, Systematic Biology, 54, (2), 2005, p183 - 196Journal Article, 2005, DOI
• Arojju, SK, Conaghan, P, Barth, S, Milbourne, D, Casler, MD, Hodkinson, TR, Michel, T, Byrne, S, Genomic prediction of crown rust resistance in Lolium perenne, BMC Genetics, 19, 2018, p35-Journal Article, 2018, DOI , URL
• Suwanphakdee, C, Simpson, DA, Hodkinson, TR, Chantaranothai, P, Typification of Piper species (Piperaceae) in Southeast Asia, especially Thailand, Kew Bulletin, 73, 2018, p33-Journal Article, 2018, DOI , URL
• Sungkaew, S, Hodkinson, TR, Xia, N, Teerawatananon, A , Chimonocalamus auriculatus, one more new temperate woody bamboo species of the genus (Poaceae: Bambusoideae: Arundinarieae) described from Thailand, Phytotaxa, 357, (1), 2018, p66-70Journal Article, 2018, DOI , URL
• Murphy, BR, Doohan, FM, Hodkinson TR, Matching source and sink: An environmentally tailored fungal endophyte consortium increases yield in three field-grown barley cultivars, Cogent Food & Agriculture, 4, 2018, p1 - 14Journal Article, 2018, DOI , URL
• Zhao, D, Parnell, JAN, Hodkinson, TR, Typification of names in Camellia (Theaceae), II, Phytotaxa, 351, (1), 2018, p93-95Journal Article, 2018, DOI , URL
• GenoGrass: a low cost, high throughput genotyping platform for perennial ryegrass in, editor(s)Horan, B, Hennessy, D, O'Donovan, M, Kennedy, E, McCarthy, B, Finn, JA, O'Brien, B , Sustainable meat and milk production from grasslands. Proceedings of the 27th General Meeting of the European Grassland Federation, 2018, pp842-844 , [Curran, N, Barth, S, Hodkinson, TR, Byrne, S, Milbourne, D]Book Chapter, 2018, URL
• Positive plant-fungal interactions in, editor(s)K. J. Willis , State of the World's Fungi. Report., Royal Botanic Gardens, Kew., 2018, pp32 - 39, [Suz LM, Sarasan V, Wearn JA, Bidartondo, MI, Hodkinson, TR, Kowal J, Murphy, BR, Rodriguez RJ, Gange A]Book Chapter, 2018, URL
• Murphy, B. R, Jadwiszczak, M. J., Soldi, E, Hodkinson, TR , Endophytes from the crop wild relative Hordeum secalinum L. improve agronomic traits in unstressed and salt-stressed barley, Cogent Food & Agriculture, 4, (1), 2018, p1 - 10Journal Article, 2018, DOI
• Phueakkhlai, O., Priwan Srisom, P., Suddee, S., Hodkinson, T. R., Srisom, P, Sungkaew, S, Dendrobium chrysocrepis (Orchidaceae), a new record for Thailand, Thai Forest Bulletin (Botany), 46, (2), 2018, p134 - 137Journal Article, 2018, DOI , URL
• Sirimongkol, S., Parnell, J.A.N., Hodkinson, T, Middleton, D.J. & Puglisi, C. , Five new species of Henckelia (Gesneriaceae) from Myanmar and Thailand. , Thai Forest Bulletin, 47, 2019, p38 - 54Journal Article, 2019, DOI
• T R. Hodkinson, F. M. Doohan, M. J. Saunders and B. R. Murphy, Endophytes for a growing world. , Cambridge University Press, 2019, 1 - 420ppBook, 2019, URL
• Endophytes for a growing world in, editor(s)T R. Hodkinson, F. M. Doohan, M. J. Saunders and B. R. Murphy. C , Endophytes for a growing world, Cambridge, UK, Cambridge University Press, 2019, pp1 - 22, [Hodkinson, T. R. and Murphy, B. R.]Book Chapter, 2019, URL
• Emerging methods for biological control of barley diseases including the role of endophytes. in, editor(s)T. R. Hodkinson, F. M. Doohan, M. J. Saunders and B. R. Murphy. , Endophytes for a growing world, Cambridge, UK, Cambridge University Press, 2019, pp93 - 119, [Høyer, A. K., Jørgensen, H. J. L., Jensen, B., Murphy, B. R. and Hodkinson, T. R. ]Book Chapter, 2019, URL
• In vitro methods for plant-microbe interaction in, editor(s)T. R. Hodkinson, F. M. Doohan, M. J. Saunders and B. R. Murphy. , Endophytes for a growing world, Cambridge, UK, Cambridge University Press, 2019, [Lahiri, A., Douglas, G. C., Murphy, B. R. and Hodkinson, T. R. ]Book Chapter, 2019, URL
• Isolation, diversity and potential use of endophytes in the biomass and bioenergy crop Miscanthus. in, editor(s)T. R. Hodkinson, F. M. Doohan, M. J. Saunders and B. R. Murphy. , Endophytes for a growing world, Cambridge, UK, Cambridge University Press, 2019, pp188 - 207, [Beekwilder, J., Murphy, B. R., Mathuna, E. M.,Barry, A. and Hodkinson, T. R. ]Book Chapter, 2019, URL
• Prospecting crop wild relatives for beneficial endophytes. in, editor(s)T. R. Hodkinson, F. M. Doohan, M. J. Saunders and B. R. Murphy. , Endophytes for a growing world, Cambridge, UK, Cambridge University Press, 2019, pp390 - 410, [Murphy, B. R., Doohan F. M and Hodkinson, T. R. ]Book Chapter, 2019, URL
• Thammarong, W., Chantaranothai, P., Parnell, J., Hodkinson, T.R., Pornpongrungrueng, P. (2019)., Pollen morphology of Lecythidaceae in Southeast Asia. , Thai Forest Bulletin (Botany), 47, (1), 2019, p55 - 68Journal Article, 2019, DOI
• Hodkinson TR, Perdereau A, Klaas M, Cormican P, Barth S , Genotyping by sequencing and plastome analysis finds high genetic variability and geographical structure in Dactylis glomerata L. in Northwest Europe despite lack of ploidy variation, Agronomy, 9, (7), 2019, p342Journal Article, 2019, DOI
• Murphy BR & Hodkinson TR, Endophyte ecology, diversity and utilisation, Plant Ecology & Diversity, 11, (5-6), 2018, p551 - 554Journal Article, 2018, URL
• Interaction of Epichloe infected forage grasses with fungal root endophytes in, editor(s)Huguenin-Elie O, Studer B, Kölliker R, Reheul D, Probo M, Barre P, Feuerstein, Roldán-Ruiz I, Mariotte P, Hopkins A , Improving sown grasslands through breeding and management, Grassland Science in Europe Volume 24, Wageningen, The Netherlands, Wageningen Academic Publishers, 2019, pp428 , [Hodkinson TR, Soldi E, Caradus JR, Johnson LJ, Murphy BR ]Book Chapter, 2019, URL
• Investigating the effect of seeding rate on forage grass sward composition. in, editor(s)Huguenin-Elie O, Studer B, Kölliker R, Reheul D, Probo M, Barre P, Feuerstein, Roldán-Ruiz I, Mariotte P, Hopkins A , Improving sown grasslands through breeding and management, Grassland Science in Europe, Volume 24, Wageningen, The Netherlands, Wageningen Academic Publishers, 2019, pp279 - [Curran N, Perdereau A, Barth S, Hodkinson TR, Byrne S, Milbourne D]Book Chapter, 2019, URL
• Zhao, D., Parnell, J.A.N. & Hodkinson, T.R., Typification of names in Camellia (Theaceae), III., Phytotaxa, 415, 2019, p298 - 300Journal Article, 2019
• Phueakkhlai O, Suddee S, Hodkinson TR, Sungkaew S, H Æ. Pedersen, A new species of Dendrobium (Orchidaceae: Epidendroideae: Malaxideae) described from previously perplexing specimens of the Seidenfaden collection, Phytotaxa, 419, (2), 2019, p197 - 202Journal Article, 2019, DOI , URL
• Pornpongrungrueng, P., Chantaranothai, P., Parnell, J.A.N. & Hodkinson, T.R. , Two new species of Phyllanthus (Phyllanthaceae) from Thailand., Phytokeys, 136, 2019, p35 - 44Journal Article, 2019
• Annabel L. Smith, Trevor R. Hodkinson, Jesus Villellas, Jane A. Catford, Anna Mária Csergő, Simone P. Blomberg, Elizabeth E. Crone, Johan Ehrlén, Maria B. Garcia, Anna-Liisa Laine, Deborah A. Roach, Roberto Salguero-Gómez, Glenda M. Wardle, Dylan Z. Childs, Bret D. Elderd, Alain Finn, Sergi Munné-Bosch, Maude E. A. Baudraz, Judit Bódis, Francis Q. Brearley, Anna Bucharova, Christina M. Caruso, Richard P. Duncan, John M. Dwyer, Ben Gooden, Ronny Groenteman, Liv Norunn Hamre, Aveliina Helm, Ruth Kelly, Lauri Laanisto, Michele Lonati, Joslin L. Moore, Melanie Morales, Siri Lie Olsen, Meelis Pärtel, William K. Petry, Satu Ramula, Pil U. Rasmussen, Simone Ravetto Enri, Anna Roeder, Christiane Roscher, Marjo Saastamoinen, Ayco J. M. Tack, Joachim Paul Töpper, Gregory E. Vose, Elizabeth M. Wandrag, Astrid Wingler, Yvonne M. Buckley, Global gene flow releases invasive plants from environmental constraints on genetic diversity, Proceedings of the National Academy of Sciences, 117, (8), 2020, p4218 - 4227Journal Article, 2020, DOI
• Coughlan P, Carolan, JC, Hook, ILI, Kilmartin, L, Hodkinson TR , Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions, Horticulturae, 6, 2020, p19-Journal Article, 2020, DOI
• Nansai S, Srisanga P, Hodkinson TR, Suwanphakdee C, Viola umphangensis (Violaceae), a new species from Thailand., Nordic Journal of Botany, 38, 2020, p1 - 4Journal Article, 2020, DOI
• BR Murphy, E Soldi, MJ Jadwiszczak, TR Hodkinson, Synergy between fungal endophytes improves fruit production in strawberry cultivar, Emergent Life Sciences Research, 5, (1), 2019, p29 - 41Journal Article, 2019, DOI
• Soldi E, Casey C, Murphy BR, Hodkinson TR., Fungal Endophytes for Grass Based Bioremediation: An Endophytic Consortium Isolated from Agrostis stolonifera Stimulates the Growth of Festuca arundinacea in Lead Contaminated Soil., Journal of Fungi, 6, (4), 2020, p254-Journal Article, 2020, DOI
• Curran N, Grogan D, Milbourne D, Byrne SL, O'Riordan E, Hanley M, Grant J, Hodkinson TR, Barth S , Persistency, yield, and silage quality of Festulolium cultivars over a consecutive five-year period under a mild Atlantic climate , Biologia Plantarum, 64, 2020, p856-864Journal Article, 2020, DOI
• Mitros T, Session AM, James BT, Guohong A, Belaffif MB, Clark LV, Shu S, Dong H, Barling A, Holmes JR, Mattick JE, Bredeson JV, Liu S, Farrar K, Głowacka K, Jeżowski S, Barry K, Chae WB, Juvik JA, Gifford J, Oladeinde A,Yamada T, Grimwood J, Putnam NH,De Vega J, Barth S, Klaas M, Hodkinson TR, Li L, Jin X, Peng J, Yu CY,Heo K, Yoo JH, Ghimire BK, Donnison IS, Schmutz J, Hudson ME, Sacks EJ, Moose SP, Swaminathan K, Rokhsar DS, Genome biology of the paleotetraploid perennial biomass crop Miscanthus, Nature Communications, 11, (5442), 2020, p1 - 11Journal Article, 2020, DOI
• Suwanphakdee C, Simpson DA, Hodkinson TR, Chantaranothai P , A synopsis of Thai Piper (Piperaceae), Thai Forest Bulletin (Botany), 48, (2), 2020, p145-183Journal Article, 2020, DOI
• McKeon-Bennett MMP, Hodkinson TR , Sphagnum moss as a novel growth medium in sustainable indoor agriculture systems, Current Opinion in Environmental Science & Health, 22, 2021, p100269Journal Article, 2021, DOI , URL
• Høyer AK, Hodkinson TR. , Hidden Fungi: Combining Culture-Dependent and -Independent DNA Barcoding Reveals Inter-Plant Variation in Species Richness of Endophytic Root Fungi in Elymus repens. , Journal of Fungi, 7, (6), 2021, p466Journal Article, 2021, DOI , URL
• Murphy BR, Hodkinson TR, Doohan F, 'Method for improving the mean dry shoot weight, mean dry grain weight, and suppressing seed-borne infection in a cereal crop', USA, US010765084B2, 2020, heProvost,Felows,Foundation Scholars & the Other Members of Board,oftheColegeoftheHoly& UndividedTrinityofQueenElizabeth, NearDublin,Dublin(IE);University ColegeDublin,NationalUniversityof Ireland,Dublin,Dublin(IE)Patent, 2020, URL
• Persistency, yield, and silage quality of Festulolium cultivars over a consecutive five-year period under a mild Atlantic climate in, editor(s)David Kopecký, Arkadiusz Kosmala , Festulolium from the Nature to Modern Breeding Festulolium from the Nature to Modern Breeding, Czech Republic, Palacký University Olomouc, 2021, pp89 - 108, [Curran N, D Grogan, D Milbourne, SL Byrne, E O'Riordan, M Hanley, J Grant,TR Hodkinson, S.Barth]Book Chapter, 2021, URL
• Lahiri A, Murphy BR, Hodkinson TR, Assessing Genotypic and Environmental effects on endophyte communities of Fraxinus (Ash) using culture dependent and independent DNA sequencing., Journal of Fungi, 7, (7), 2021, p565-Journal Article, 2021, DOI , URL
• Soldi E, Fuller E, Tiley AMM, Murchie AK, Hodkinson TR, First Report of the Ash Sawfly, Tomostethus nigritus, Established on Fraxinus excelsior in the Republic of Ireland, Insects, 13, (1), 2022, p6-Journal Article, 2022, DOI , URL
• Byrne T, Farrelly N, Kelleher C, Hodkinson TR, Byrne SL, Barth S, Genetic diversity and structure of a diverse population of Picea sitchensis using genotyping-by-sequencing, Forests, 19, (9), 2022, p1511-Journal Article, 2022, DOI , URL
• Zhao, D-W., Hodkinson, TR and Parnell, JA , Phylogenetics of global Camellia (Theaceae) based on three nuclear regions and its implications for systematics and evolutionary history. , Journal of Systematics and Evolution, 2023, phttps://doi.org/10.1111/jse.12Journal Article, 2023, DOI , URL
• Høyer AK, Jørgensen HJL, Hodkinson TR, Jensen B. , Fungal Endophytes Isolated from Elymus repens, a Wild Relative of Barley, Have Potential for Biological Control of Fusarium culmorum and Pyrenophora teres in Barley. , Pathogens, 11, (10), 2022, p1097-Journal Article, 2022, DOI
• Suwanphakdee, C., Hodkinson, T. R., & Chantaranothai, P. , New species and a revision of the genus Peperomia (Piperaceae) in Thailand., Thai Forest Bulletin (Botany), 50, (2), 2022, p104 - 119Journal Article, 2022, DOI
• Sarapan A, Hodkinson TR, Suwanphakdee C, Assessment of Morphological, Anatomical and Palynological Variation in the Medicinal Plant Disporopsis longifolia Craib (Asparagaceae) for Botanical Quality Control, Plants, 12(2), 2023, p259-Journal Article, 2023, DOI
• Soldi, E, Tiley, A, O'Hanlon, R, Murphy, BR, & Hodkinson, TR, Ash Dieback and Other Pests and Pathogens of Fraxinus on the Island of Ireland, Biology and Environment: Proceedings of the Royal Irish Academy , 122, (2), 2022, p85-122Journal Article, 2022, DOI
• Genetic variation of paclitaxel biosynthesis genes in yews (Taxus) and allies in, editor(s)Ramil-Rego P, Rodríguez Guitián MA, Ferreiro da Costa J, Gómez-Orellana L , Conservación y restauración de los bosques de tejo en Europa: 11-18. Monografías do Ibader, Serie Biodiversidade, Lugo., Galicia, Spain, Ibader, USC, 2023, pp341 - 351, [Coughlan P, Carolan JC, Hook IL ,Hodkinson TR]Book Chapter, 2023, URL
• Touafchia, S; Maurin, O; Boonsuk, B; Hodkinson, TR; Chantaranothai, P; Rakotomalala, N; Randrianarimanana, F; Randriamampianina, JA, Roy S; MacKinnon, L; Rakotoarinivo, M; Besnard, G; Haevermans, T; Vorontsova, MS, Evolutionary history, traits, and weediness in Digitaria (Poaceae: Panicoideae), Botanical Journal of the Linnean Society, (boad014), 2023Journal Article, 2023, URL
• Suwanphakdee C, Karapan S, Banchong Y, Hodkinson TR , Three new species, two new records and additional taxonomic notes of Piper (Piperaceae) from Thailand. , Nordic Journal of Botany, 2023, p1 - 19Journal Article, 2023
• Alwarnaidu Vijayarajan V, Morgan C, Onkokesung N, Cook, SK, Hodkinson TR, Barth S, Hennessy M, Forristal, PD , Characterization of Mesosulfuron-Methyl Iodosulfuron-Methyl and Pyroxsulam-Resistant Annual Bluegrass (Poa annua) in an Annual Cropping System., Weed Science, doi:10.1017/wsc.2023, 2023, 1, p23Journal Article, 2023
• Suwanphakdee C, Sutthinon P, Hodkinson TR, Characterization of anatomical characters of Peperomia (Piperaceae) from Asia for taxonomy, Botanical Journal of the Linnean Society, 2024, pboad075Journal Article, 2024, DOI , URL
• Arthan W, Hodkinson TR, Xia N, Wong KM, O-Chakull W, Teerawatananon A, Sungkaew S, Taxonomic revision of the genus Chimonocalamus (Arundinarieae, Bambusoideae, Poaceae) in Thailand, Phytotaxa, 636, (4), 2024, p279 - 286Journal Article, 2024, DOI
• Zuntini AR, Carruthers, T, Maurin O et al., Phylogenomics and the rise of the angiosperms., Nature, 2024, phttps://doi.org/10.1038/s41586Journal Article, 2024, DOI , URL
• Banchong Y, Leepasert T, Jarupund P, Hodkinson TR, Boylan F, Suwanphakdee C., Chemotaxonomy of Southeast Asian Peperomia (Piperaceae) Using High-Performance Thin-Layer Chromatography Colour Scale Fingerprint Imaging and Gas Chromatography"Mass Spectrometry, Plants, 13, (19), 2024, p2751Journal Article, 2024, DOI , URL
• Quill Luke , Ferreira Diogo , Joyce Brian , Coleman Gabriel , Harper Carla , Martins Marta , Hodkinson Trevor , Trimble Daniel , Gill Laurence , O"Connell David W., An integrated mitigation approach to diffuse agricultural water pollution"a scoping review, Frontiers in Environmental Science, 12, 2024, p1 - 17Journal Article, 2024, DOI , URL
• Sarapan A, Chamchumroon V, Hodkinson TR, et al., Taxonomic revision of Disporum (Colchicaceae) from Thailand including four new species., Blumea, 69, (2), 2024, p139 - 160Journal Article, 2024, DOI , URL
• Grass Phylogeny Working Group III*, A nuclear phylogenomic tree of grasses (Poaceae) recovers current classification despite gene tree incongruence, New Phytologist, 2024, p1 - 17Journal Article, 2024, DOI , URL
• Suwanphakdee C, DA Simpson, TR Hodkinson, Piperaceae, Flora of Thailand 16 (3), 875-965, 16, (3), 2024, p875 - 965Journal Article, 2024, URL
• Suwanphakdee C, DA Simpson, TR Hodkinson, Piper, Flora of Thailand, 16, (3), 2024, p896-964Journal Article, 2024, URL
• Suwanphakdee C, Hodkinson TR, Peperomia, 16, (3), 2024, p876 - 896Journal Article, 2024, URL
• Kelleher, CT, Hodkinson TR, Douglas GC, Kelly DL , Species distinction in Irish populations of Quercus petraea and Quercus robur: morphological versus molecular analyses. , Annals of Botany , 96, 2005, p1237 - 1246Journal Article, 2005, DOI
• Harbourne, ME, Douglas GC, Waldren S, Hodkinson TR , Characterization and primer development for amplification of chloroplast microsatellite regions of Fraxinus excelsior, Journal of Plant Research , 118, 2005, p339 - 341Journal Article, 2005, DOI
• McGrath S, Hodkinson TR, Salamin N, Barth S , Development and testing of novel chloroplast microsatellite markers for Lolium perenne and other grasses (Poaceae) from de novo sequencing and in silico sequences. , Molecular Ecology Notes , 6, 2006, p449 - 452Journal Article, 2006, DOI
• Carolan JC, Hook ILI, Chase MW, Kadereit JW, Hodkinson TR , Phylogenetics of Papaver and related genera based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnL intron and trnL-F intergenic spacers, Annals of Botany , 98, 2006, p141 - 155Journal Article, 2006, DOI
• McGrath, S, Hodkinson, TR, & Barth, S, Development and testing of novel chloroplast markers for perennial ryegrass from de novo sequencing and in silico sequences, Proceedings of the Molecular Breeding for the Genetic Improvement of Forage Crops and turf, a satellite workshop of the XX International Grassland Congress, Aberystwyth, 2005, edited by M. Humphreys , Wageningen Academic Publishers, The Netherlands, 2005, pp200Conference Paper, 2005
• McGrath, S, Barth, S, Frohlich, A, Francioso, M Lamorte SA & Hodkinson TR, Variability in quantitiy and composition of water soluble carbohydrates among Irish accessions and European varieties of perennial ryegrass, XX International Grassland Congress, Dublin, 2005, edited by O'Mara FP, Wilkins RJ, Mannetje L.'t, Lovett DK, Rogers PAM, Boland TM , Wageningen Academic Publishers, The Netherlands, 2005, pp126Conference Paper, 2005
• Hodkinson TR, Parnell JAN , Reconstructing the tree of life: taxonomy and systematics of species rich taxa. Systematics Association Special Series Volume 72 , Boca Raton, FL, USA, Taylor and Francis, CRC Press,, 2007, 1 - 351ppBook, 2007, URL
• Introduction to the Systematics of Species Rich Groups in, editor(s)Hodkinson TR, Parnell JAN , Reconstructing the tree of life: taxonomy and systematics of species rich taxa. Systematics Association Special Series Volume 72, Boca Raton, FL, USA, Taylor and Francis, CRC Press, 2007, pp3 - 20, [Hodkinson TR, Parnell JAN ]Book Chapter, 2007, URL
• Supersizing: Progress in Documenting and Understanding Grass Species Richness in, editor(s)Hodkinson TR, Parnell JAN , Reconstructing the tree of life: taxonomy and systematics of species rich taxa, Systematics Association Special Series Volume 72, Boca Raton, FL, USA, Taylor and Francis, CRC Press, 2007, pp279 - 298, [Hodkinson, TR, Savolainen V, Jacobs SWL, Bouchenak-Khelladi Y, Kinney MS, Savolainen V, Salamin N ]Book Chapter, 2007, URL
• Hodkinson, TR, Waldren S, Parnell, JAN, Kelleher, CT, Salamin, K, Salamin, N, DNA banking for plant breeding, biotechnology and biodiversity evaluation, Journal of Plant Research, 120, (1), 2007, p17 - 29Journal Article, 2007, DOI
• Hodkinson TR, Salamin N, Chase MW, Bouchenak-Khelladi Y , Renvoize SA, Savolainen V, Large trees, supertrees and diversification of the grass family, Aliso, 23, 2007, p248 - 258Journal Article, 2007, URL
• Flannery ML, Mitchell FJG, Coyne S, Kavanagh TA, Burke JI , Salamin N, Dowding P, Hodkinson TR, Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs, Theoretical and Applied Genetics, 113, (7), 2006, p1221 - 1231Journal Article, 2006, DOI
• The Bamboo Phylogeny Group (Clark LG, Cortes G, Dransfield S, Filgueiras TS, Guala GF, Hodkinson TR, Judziewicz E, Kelchner S, Kumar M, Li D-H, Londona X, Mejia MT, Santos-Goncalves AP, Stapleton C, Triplett J, Widjaja E, Wong KM, Xia N-H), The bamboo phylogeny project, Bamboo, 27, (6), 2006, p11 - 14Journal Article, 2006
• McGrath S, Hodkinson TR, Barth S, Extremely high cytoplasmic diversity in natural and breeding populations of Lolium (Poaceae), Heredity, 99, 2007, p531 - 554Journal Article, 2007, DOI
• Sungkaew, S., Teerwatananon, A., Parnell, J.A.N., Dransfield, S., Stapleton, C.M.A. & Hodkinson, T. , Dendrocalamus khoonmengii, a new bamboo species (Poaceae: Bambusoideae) from Peninsular Thailand., Thai Forest Bulletin, 35, 2007, p98 - 102Journal Article, 2007, URL
• Sungkaew S, Teerawatananon A, Korawat W, Hodkinson TR, Dendrocalamus copelandii (Poaceae: Bambusoideae), Thai Forest Bulletin (Bot.), 35, 2007, p94 - 97Journal Article, 2007, URL
• Christin P-A, Besnard G, Samaritani E, Duvall MR, Hodkinson TR, Savolainen V, Salamin N, Oligocene CO2 Decline Promoted C4 Photosynthesis in Grasses , Current Biology, 189, 2008, p37 - 43Journal Article, 2008, DOI , TARA - Full Text
• Simpson DA, AM. Muasya, M Alves, JJ Bruhl, S Dhooge, MW Chase, CA Furness, K Ghamkhar, P Goetghebeur, TR Hodkinson, AD Marchant, AA Reznicek, R Niewborg, EH Roalson, E Smets, JR Star, WW Thomas, KL Wlison, X Zhang, Phylogeny of Cyperaceae based on DNA sequence data - a new rbcL analysis, Aliso, 23, 2007, p72 - 83Journal Article, 2007, URL
• Teerawatananon A, Hodkinson TR, Jansenella griffithiana (Mull.Hal) Bor (Gramineae/Poaceae): a new record for Thailand and notes on its typification, Thai Forest Bulletin (Bot.), 36, 2008, p109 - 113Journal Article, 2008, URL
• Bouchenak-Khelladi Y, Salamin N, Savolainen V, Forest F, van der Bank M, Chase MW, Hodkinson TR, Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling, Molecular Phylogenetics and Evolution, 47, 2008, p488 - 505Journal Article, 2008, DOI
• Sungkaew S, Teerawatananon A, Parnell JAN, Stapleton CMA & Hodkinson TR, Phuphanochloa, a new bamboo genus (Poaceae: Bambusoideae) from Thailand, Kew Bulletin, 63, 2008, p669 - 673Journal Article, 2008, URL
• Jones E, Simpson DA, Hodkinson TR, Chase MW, Parnell, JAN, The Juncaeae-Cyperaceae interface: a combined plastid sequence analysis, Aliso, 23, 2007, p55 - 61Journal Article, 2007, URL
• Diekmann K, Hodkinson TR, Fricke E, Barth S, An optimized chloroplast DNA extraction protocol for grasses (Poaceae) proves suitable for whole plastid genome sequencing and SNP detection, PLoS ONE, 3, (7), 2008, pe281 - e281Journal Article, 2008, DOI , TARA - Full Text
• Miscanthus: Genetic Resources and Breeding Potential to Enhance Bioenergy Production in, editor(s)W. Vermerris , Genetic Improvement of Bioenergy Crops, New York, Springer, 2008, pp295 - 308, [Clifton-Brown J, Chiang Y-C, & Hodkinson TR]Book Chapter, 2008, DOI
• Variation in seed yield related and other morphological traits in a collection of Irish Lolium perenne ecotypes and bred varieties, in, editor(s)Lübberstedt T, Studer B, Graugaard S , Improvement of fodder crops and amenity grasses, Proceedings of the XXVIIth Eucarpia symposium, Copenhagen, Denmark, Eucarpia, 2007, pp22 - 27, [Barth S, McGrath S, Charles MT, Zen D & Hodkinson TR]Book Chapter, 2007
• Sungkaew S, Stapleton CMA, Salamin N, & Hodkinson TR, Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s., Journal of Plant Research, 122, 2009, p95 - 108Journal Article, 2009, DOI
• Diekmann K, Hodkinson TR, Barth S , Features of the complete chloroplast genome of perennial ryegrass (Lolium perenne L.), Proceedings of the Agricultural Research Forum , 2008, pp138 - 139Conference Paper, 2008, URL
• Bouchenak-Khelladi Y, Verboom GA, Hodkinson TR, Salamin N, Francois O, Ni Chonghaile G, Savolainen V , Origins and diversification of C4 grasses and savanna adapted ungulates, Global Change Biology, 15, (10), 2009, p2397 - 2417Journal Article, 2009, DOI
• Teerawatananon A, Sungkaew S, Hodkinson TR, Arundinella kokutensis (Poaceae, Arundinelleae), a new species from south-eastern Thailand, Kew Bulletin, 64, (4), 2009, p747 - 750Journal Article, 2009, DOI , URL
• Diekmann, K, Hodkinson TR, Wolfe K, Bekerom van den, R, Dix P, Barth S, Complete chloroplast genome sequence of a major allogamous forage species, perennial ryegrass (Lolium perenne L.), DNA Research, 16, (3), 2009, p165 - 176Journal Article, 2009, DOI
• Stapleton CMA, G Ní Chonghaile, Hodkinson TR, Molecular phylogeny of Asian woody bamboos: review for the Flora of China, Bamboo Science and Culture: The Journal of the American Bamboo Society, 22 , (1), 2009, p5 - 25Journal Article, 2009
• de Cesare M, Hodkinson TR, Barth S, Phylogenetic analyses and ploidy variation in the biomass crop Miscanthus, Agricultural Research Forum, 2009, 2009, p125 - 126Journal Article, 2009, URL
• Thomasset M, Hodkinson TR, Douglas DC, Assessing the potential for introgression of imported ash with native ash Fraxinus excelsior L.), Agricultural Research Forum, 2009, 2009, p135 - 136Journal Article, 2009, URL
• Carolan, J.C., Hook, I.L.I., Chase, M.W., Kadereit, J.W., Hodkinson, T.R, Phylogenetics of Papaver and Related Genera Based on DNA Sequences from ITS Nuclear Ribosomal DNA and Plastid trnL Intron and trnL-F Intergenic Spacers, Annals of Botany, 98, (1), 2006, p141 - 155Journal Article, 2006, DOI
• Carolan ,J.C., Hook, I.L.I., Walsh, J.J., Hodkinson, T.R., Using AFLP markers for species differentiation and assessment of genetic variability of in vitro cultured Papaver bracteatum (Section Oxytona'), Vitro Cellular and Developmental Biology - Plant, 38, (3), 2002, p300-307Journal Article, 2002, DOI
• Bouchenak-Khelladi Y, Verboom, GA, Savolainen, V, Hodkinson, TR, Biogeography of the Grasses (Poaceae): a Phylogenetic Approach to reveal Evolutionary History in Geographical Space and Geological Time, Botanical Journal of the Linnean Society, 162, 2010, p543 - 557Journal Article, 2010, DOI , URL
• Hodkinson, TR, Jones, MB, Waldren S, Parnell, JAN, Climate Change, Ecology and Systematics. The Systematics Association Special Series Volume 78, Cambridge University Press, 2011, 524 + IXppBook, 2011, URL
• Savanna biome evolution, climate change and the ecological expansion of C4 grasses in, editor(s)Hodkinson, TR, Jones, MB, Waldren S, Parnell, JAN , Climate Change Ecology and Systematics. Systematics Association Special Series Volume 78, Cambridge, Cambridge University Press, 2011, [Bouchenak-Khelladi Y & Hodkinson TR]Book Chapter, 2011, URL
• Hybridisation, introgression and climate change: a case study for the tree genus Fraxinus (Oleaceae) in, editor(s)Hodkinson, TR, Jones, MB, Waldren S, Parnell, JAN , Climate Change Ecology and Systematics. Systematics Association Special Series Volume 78., Cambridge, Cambridge University Press, 2011, pp320 - 342, [Thomasset, M, Fernández-Manjarrés JF, Douglas GC, Frascaria-Lacoste N & Hodkinson, TR]Book Chapter, 2011, URL
• de Cesare M, Hodkinson TR, Barth S, Chloroplast DNA markers (cpSSRs, SNPs) for Miscanthus, Saccharum and related grasses (Panicoideae, Poaceae), Molecular Breeding, 26, (3), 2010, p539 - 544Journal Article, 2010, DOI , URL
• Integrating ecology and systematics in climate change research in, editor(s)Hodkinson, TR, Jones, MB, Waldren S, Parnell, JAN , Climate Change Ecology and Systematics, Systematics Association Special Series Volume 78, Cambridge, Cambridge University Press, 2011, pp3 - 43, [Hodkinson, TR]Book Chapter, 2011, URL
• TR Hodkinson, G Ní Chonghaile, S Sungkaew, MW Chase, N Salamin, CMA Stapleton, Phylogenetic analyses of plastid and nuclear DNA sequences indicate a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae), Plant Ecology and Diversity, 3, 2010, p109 - 120Journal Article, 2010, DOI , URL
• McGrath S, Hodkinson TR, Charles TM, Zen DG, Barth S, Variation in inflorescence characters and inflorescence development in ecotypes and cultivars of Lolium perenne L., Grass and Forage Science, 65, 2010, p398 - 409Journal Article, 2010, DOI
• Diversification of the Grasses (Poaceae): a Phylogenetic Approach to Reveal Macro-Evolutionary Patterns. in, editor(s)O Seberg, G Petersen, A Barfod, JI Davis , Diversity, Phylogeny, and Evolution in the Monocotyledons , Denmark, Aaarhus University Press., 2010, pp451 - 475, [Bouchenak-Khelladi Y, Savolainen V, Hodkinson TR]Book Chapter, 2010, URL
• Phylogenetics of Dendrocalamus (Poaceae: Bambusoideae, Bambuseae, Bambusinae) and its Related Genera Based on Combined Multi-gene Analyses in, editor(s)O Seberg, G Petersen, A Barfod, JI Davis , Diversity, Phylogeny, and Evolution in the Monocotyledons, Denmark, Aaarhus University Press, 2010, [S Sungkaew, CMA Stapleton, TR Hodkinson]Book Chapter, 2010, URL
• Teerawatananon A, Sungkaew S, TR Hodkinson, Arundinella kerrii and Dimeria kerrii, two new endemic species from Thailand (Poaceae, Panicoideae), Novon, 21, (1), 2011, p149 - 153Journal Article, 2011, DOI , URL
• Teerawatananon A, Jacobs SWL and Hodkinson TR, Phylogenetics of Panicoideae (Poaceae) based on chloroplast and nuclear DNA sequences, Telopea, 13, 2011, p115 - 142Journal Article, 2011, URL
• Thomasset M, Fernández-Manjarrés JF, Douglas GC, Frascaria- Lacoste N, Raquin C, Hodkinson TR, Molecular and morphological characterization of reciprocal F1 hybrid ash (Fraxinus excelsior x Fraxinus angustifolia, Oleaceae) and parental species reveals asymmetric character inheritance, International Journal of Plant Sciences, 172, (3), 2011, p423 - 433Journal Article, 2011, DOI
• Teerawatananon A, Sungkaew S, Boontia V, TR Hodkinson, A synopsis of Thai Apocopis Nees (Poaceae, Panicoideae), Thai Forest Bulletin (Bot.), 38, 2010, p150 - 159Journal Article, 2010, URL
• The Complete Chloroplast Genome Sequence of Perennial Ryegrass (Lolium perenne L.) Reveals Useful Polymorphisms Among European Ecotypes in, editor(s)Huyghe C , Sustainable use of Genetic Diversity in Forage and Turf Breeding, Netherlands, Springer , 2010, pp409 - 413, [Diekmann K, Hodkinson TR, Wolfe KH, Bekerom R, Dix, PJ, Barth S]Book Chapter, 2010, DOI
• Delêtre M, McKey DB, Hodkinson TR, Marriage exchanges, seed exchanges, and the dynamics of manioc diversity, Proceedings of the National Academy of Sciences USA, 108, (45), 2011, p18249-18254Journal Article, 2011, DOI , URL , TARA - Full Text
• Grass Phylogeny Working Group II: Aliscioni S, Bell HL, Besnard G, Christin PA, Columbus JT, Duvall MR, Edwards EJ, Giussani L, Hasenstab-Lehman K, Hilu KW, Hodkinson TR, Ingram AL, Kellogg EA, Mashayekhi S, Morrone O, Osborne CP,Salamin N, Schaefer H, Spriggs E, Smith SA, Zuloaga F, New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins, New Phytologist, 193, 2012, p304 - 312Journal Article, 2012, DOI , TARA - Full Text
• Diekmann K, Hodkinson TR, Barth S, New chloroplast microsatellite markers prove to be suitable for assessing genetic diversity of Lolium perenne and other related grass species, Annals of Botany, 110, 2012, p1327 - 1339Journal Article, 2012, DOI , TARA - Full Text
• Donnelly A, Caffarra A, Kelleher CT, O'Neill BF, Diskin E, Pletsers A, Proctor H, Stirnemann R, O'Halloran J, Peñuelas J, Hodkinson TR, Sparks TH, Surviving in a warmer world: environmental and genetic responses, Climate Research, 53, 2012, p245 - 262Journal Article, 2012, DOI , TARA - Full Text
• Trias-Blasi A, Parnell JAN, Hodkinson TR, Multi-gene region phylogenetic analysis of the grape family (Vitaceae), Systematic Botany, 37, 2012, p941 - 950Journal Article, 2012, DOI
• Thomasset M, Fernández-Manjarrés JF, Douglas GC, Bertolino P, Frascaria-Lacoste N, Hodkinson TR, Assignment testing reveals multiple introduced source populations including potential ash hybrids (Fraxinus excelsior x F. angustifolia) in Ireland, European Journal of Forest Research, 132, 2013, p195 - 209Journal Article, 2013, DOI
• Relationships between Phuphanochloa (Bambuseae, Bambusoideae, Poaceae) and its related genera in, VIII World Bamboo Congress Proceedings Vol 5, 2010, pp55 - 63, [Sungkaew S, Teerawatananon A, Hodkinson TR]Book Chapter, 2010, URL
• Christin P-A, Osborne CP, Chatelet DS, Columbus JT, Besnard G, Hodkinson TR, Garrison LM, Vorontsova MS, Edwards EJ, Anatomical enablers and the evolution of C4 photosynthesis in grasses, Proceedings of the National Academy of Sciences USA, 110, 2013, p1381-1386Journal Article, 2013, DOI , TARA - Full Text
• Teerawatananon A, Sungkaew S, Boontia V, Hodkinson TR, A taxonomic revision of Germainia (Andropogoneae: Poaceae) in Thailand, Blumea, 57, 2013, p221-228Journal Article, 2013, DOI
• Kelchner SA & The Bamboo Phylogeny Group: Clark L, Cortés G, Oliveira RP, Dransfield S, Filgueiras T, Fisher AE, Guala GF, Hodkinson TR, Judziewicz E, Kumar M, Li D-Z, Londoño X, Mejia MT, Santos-Gonçalves AP, Stapleton CMA, Sungkaew S, Triplett J, Widjaja E, Wong KM, Xia N-H, Higher level phylogenetic relationships within the bamboos (Poaceae: Bambusoideae) based on five plastid markers. Molecular Phylogenetics and Evolution, Molecular Phylogenetics and Evolution, 67, 2013, p404 - 413Journal Article, 2013, DOI
• Teerawatananon A, Hodkinson TR, Sungkaew, S, Population Genetic Structure of Two Forest Grasses with Contrasting Life Forms, Arundinella setosa and Garnotia tenella in Thailand, Kasetsart Journal (Nat. Sci.), 47, 2013, p8 - 22Journal Article, 2013, URL
• Chaisongkrama W, Chantaranothai P & Hodkinson TR, A taxonomic revision of the genus Eragrostis (Poaceae) in Thailand, ScienceAsia, 39, 2013, p111 - 123Journal Article, 2013, DOI , TARA - Full Text
• Gallagher E, Douglas GC, Kelly DL, Barth S, Kelleher, CT, Hodkinson TR, Old age sex: a parentage study of different age cohorts in a native veteran pedunculate oak (Quercus robur L.) woodland using microsatellite markers, Biology and Environment - Proceedings of the Royal Irish Academy, 2013, p115--Journal Article, 2013, DOI
• Murphy BR, Doohan FM, Hodkinson TR, Fungal endophytes of barley roots, The Journal of Agricultural Science, 152, (4), 2013, p602-615Journal Article, 2013, DOI
• Perdereau AC, Douglas GC, Hodkinson TR, Kelleher CT, High levels of variation in Salix lignocellulose genes revealed using poplar genomic resources, Biotechnology for Biofuels, 6, 2013, p1 - 15Journal Article, 2013, DOI , URL , TARA - Full Text
• Teerawatananon A, Sungkaew S, Marod D, Hodkinson TR , Studies in the recent new genus record Pseudostachyum (Poaceae: Bambusoideae) from Thailand: notes on its taxonomy, distribution and habitat, Nordic Journal of Botany, 32, 2013, p51-54Journal Article, 2013, DOI , TARA - Full Text
• First Insights into the Mitochondrial Genome of Perennial Ryegrass (Lolium perenne) in, editor(s)Bath S, Milbourne D , Breeding strategies for sustainable forage and turf grass improvement, 2013, pp141 - 145, [Diekmann K, Hodkinson TR, Wolfe KH, Barth S]Book Chapter, 2013, DOI , URL
• Murphy BR, Hodkinson TR & Doohan FM, Mechanisms of beneficial colonisation of barley by fungal root endophytes, Aspects of Applied Biology, 120, 2013, p35 - 44Journal Article, 2013
• Parnell JAN, Pedersen HAE, Hodkinson TR, Balslev H, van Welzen PC, Simpson D, Middleton DJ, Esser H-J, Pooma R, Utteridge T, Staples G, Hybrids and the Flora of Thailand, Thai Forest Bulletin (Bot.), 41, 2013, p1 - 9Journal Article, 2013, URL
• McGrath S, Hodkinson TR, Frohlich A, Grant J, Barth S, Seasonal and genetic variations in water-soluble carbohydrates and other quality traits in ecotypes and cultivars of perennial ryegrass (Lolium perenne L.), Plant Genetic Resources: Characterization and Utilization, doi:10.1017/S1479262, 2014, p1 - 12Journal Article, 2014, DOI
• Sungkaew S, Hodkinson TR, Classification of bamboos (Poaceae; Bambusoideae) in Thailand inferred from a multi-gene region phylogenetic analysis, Journal of Tropical Plants Research, 1, 2008, p40 - 49Journal Article, 2008
• Strijk JS, Bone RE, Thébaud C, Buerki S, Fritsch PW, Hodkinson TR, Strasberg D, Timing and tempo of evolutionary diversification in a biodiversity hotspot: Primulaceae on Indian Ocean islands, Journal of Biogeography, 41, 2014, p810 - 822Journal Article, 2014, DOI
• Głowacka K, Clark LV , Adhikari S, Peng J , Stewart JR , Nishiwaki A, Yamada T, Jørgensen U, Hodkinson TR , GiffordJ , Juvik JA, Sacks EJ, Genetic variation in Miscanthus ×giganteus and the importance of estimating genetic distance thresholds for differentiating clones, GCB Bioenergy, 7, (2), 2015, p386-404Journal Article, 2015, DOI , TARA - Full Text
• Murphy BR, Doohan FM, Hodkinson TR, Yield increase induced by the fungal root endophyte Piriformospora indica in barley grown at low temperature is nutrient limited, Symbiosis, 62, 2014, p29-39Journal Article, 2014, DOI
• Thomasset M, Hodkinson TR, Restoux, G, Frascaria-Lacoste N, Douglas GC, Fernandez-Manjarres, JF, Thank you for not flowering: conservation genetics and gene flow analysis of native and non-native populations of Fraxinus (Oleaceae) in Ireland, Heredity, 112, 2014, p596 - 606Journal Article, 2014, DOI , TARA - Full Text
• Hodkinson TR, de Cesare M, Barth S, Nuclear SSR Markers for Miscanthus, Saccharum, and Related Grasses (Saccharinae, Poaceae), Applications in Plant Sciences, 1, (11), 2013Journal Article, 2013, DOI
• Boonsuk B, Chantaranothai P, Hodkinson TR, A new species and two new taxon records of Digitaria (Poaceae: Panicoideae) for Thailand, Phytotaxa, 161, (4), 2014, p283 - 288Journal Article, 2014, DOI , URL
• Soh WK, von Sternburg M, Hodkinson TR, Parnell JAN, Buxus sirindhorniana sp. nov. (Buxaceae), a bicarpellate species from Thailand, Nordic Journal of Botany, 32, 2014, p452-458Journal Article, 2014, DOI , TARA - Full Text
• Kelleher CT, Hodkinson TR, Kelly DL, Douglas GC, Genetic analysis reveals four Irish oak genotypes, Coford Connects, 2010, 2010Journal Article, 2010
• Hodkinson, T.R., Jones, M.B., Waldren, S. & Parnell, J.A.N., Climate Change, Ecology and Systematics, Cambridge, Cambridge University Press, 2011, 1 - 524ppBook, 2011
• Boonsuk B, Chantaranothai, P, Hodkinson TR, Digitaria isanensis sp. nov. and a reinstated taxon of Digitaria (Poaceae) from Thailand, Nordic Journal of Botany, 32, 2014, p811-814Journal Article, 2014, DOI , URL
• Jones MB, Finnan J, Hodkinson TR, Morphological and physiological traits for higher biomass production in perennial rhizomatous grasses grown on marginal land, GCB Bioenergy, 7, 2014, p375-385Journal Article, 2014, DOI , URL
• Perdereau AC, Kelleher CT, Douglas GC, Hodkinson TR, High levels of gene flow and genetic diversity in Irish populations of Salix caprea L. inferred from chloroplast and nuclear SSR markers, BMC Plant Biology, 14, 2014, p202-Journal Article, 2014, DOI , URL , TARA - Full Text
• Estep M, McKain MR, Diaz DV, Zhong J, Hodge JG, Hodkinson TR, Layton D, Malcomber S, Pasqueth R, Kellogg EA , Allopolyploidy, diversification, and the Miocene grassland expansion, Proceedings of the National Academy of Sciences USA, Proceedings of the National Academy of Sciences USA, 11, edited by 42 , 2014, pp15149-15154Conference Paper, 2014, DOI , URL , TARA - Full Text
• Hodkinson TR, Klaas M, Jones MB, Prickett R, Barth S, Miscanthus: a case study for the utilization of natural genetic variation, Plant Genetic Resources: Characterization and Utilization, 13, 2015, p219-237Journal Article, 2015, DOI
• Brian Murphy, Fiona Doohan, Trevor Hodkinson, 'A method for improving the mean dry shoot weight and suppressing seed borne infection in a cereal crop', European Patent Office, EP14182893, 2014, Brian Murphy, Fiona Doohan, Trevor HodkinsonPatent, 2014
• Suwanphakdee C, TR Hodkinson, P Chantaranothai, New records of Peperomia (Piperaceae) in Thailand, THAI FOR. BULL. (BOT.) , 42, 2014, 61-67Journal Article, 2014

• Kelleher CT, Martin JR, Hodkinson TR, Kelly DL, Douglas G, Investigating genetic variation of Irish oak populations using chloroplast DNA analysis, Teagasc, Horticulture and Farm Forestry Series, 31, 2003, p1 - 23Journal Article
• Flannery ML, Mitchell FJG, Hodkinson TR, Kavanagh T, Dowding P, Coyne S, Burke JI, Environmental risk assessment of genetically modified crops, In Research Report 2001: Crops Research Centre, Oak Park, 2002, p64 - 66Journal Article
• Hodkinson TR, Discovering new botanical riches in a Guyanese rainforest: Department of Botany Summer Field Course 2001, Trinity Today, 7, 2002, p18Journal Article
• Kelleher CT, Walsh D, Hodkinson TR, Kelly DL, Douglas G, Genetic variation of Irish oak: first ever in-depth analysis of genetic variation in native Irish trees, COFORD Forestry and Wood Update, 2, (6), 2002, p4 - 5Journal Article
• Savolainen V, Salamin N & Hodkinson TR, Supertrees, Kew Scientist, 21, 2002, p5Journal Article
• Hodkinson TR, Genetic resources of Miscanthus, Kew Scientist, 14, 1996, p6Journal Article
• Douglas GC, Abbott J, Hodkinson TR, Genetic quality determination in vegetatively propagated plants using microsatellites, European COST Action 843, Heraklion Crete, 2004, pp18 - 21Conference Paper
• Douglas GC, Harbourne M, Waldren S, Hodkinson TR, Improving Fraxinus (ash) productivity by testing, selection, propagation and promotion of improved genetic resources. In: Quality enhancement of plant production through tissue culture., European COST Action 843 WG3, Blankenberge, Belgium, 2001, pp35 - 37Conference Paper
• Hodkinson TR, Plant Systematics: a phylogenetic approach, by Judd WS, Campbell CS, Kellogg EA, Stevens PF , Briefings in Bioinformatics, 1, (2), 2000, p201-202Review
• S Barth, S McGrath, A Fröhlich, TR Hodkinson , The importance of diversity, T Research, 2, 2007, p22 - 23Journal Article, URL
• Douglas GC, Fernandez, JF, Hodkinson TR, Frascaria-Lacoste N, Thomasset M, Keeping Irish trees pure, Science Spin, 31, 2009, p10 - 11Journal Article
• Hook, I., Carolan, J. & Hodkinson, T., Systematics and phytochemical analysis of the genus Papaver Section Oxytona (=Macrantha), World Conference on Medicinal and Aromatic Plants, Budapest, 2001Conference Paper
• Hook, I., Visdal-Johnsen, L. & Hodkinson, T., Diversity of morphological and chemical characteristics of yew species, Phytochemical Society of Europe (Young Scientists), Gargnano., 2002Conference Paper
• Hook, I., Kilmartin, L. & Hodkinson, T., Molecular systematics and chemical characterization of Taxus and related genera, Irish Botanists Meeting , UCC, 2000Conference Paper
• I Hook, J Carolan, T Hodkinson, In vitro culture of Papaver bracteatum: Systematics of the Section Oxytona, Irish Botanists Meeting , UCC, 2000Conference Paper
• CT Kelleher, TR Hodkinson, DL Kelly, GC Douglas, Irish oak - genetic diversity and the Iberian connection, Coford Connects , 18, 2010, p1 - 4Journal Article, URL

My research is mainly focussed in fields known as molecular systematics, genetic resource characterisation and endophyte biology. I have specialist knowledge of the grass family and of forest tree genetics. I collaborate with a number of national (Department of Agriculture, Teagasc) and international institutions (Royal Botanic Gardens, Kew, UK; University of Lausanne).

• Title

  BioCrop
  Summary

  Biostimulants and biofertilisers for crops
  Funding Agency

  DAFM
  Date From

  2020
  Date To

  2025
• Title

  Evolve
  Summary

  Evolving grass weed challenges and their impact on the adoption of carbon smart tillage systems. Herbicide resistance in grasses
  Funding Agency

  DAFM
  Date From

  2022
  Date To

  2026
• Title

  Detect PNP: Detecting Plant Nursery Pathogens Using High Throughput Sequencing Technology
  Summary

  Provide methods for the detection of microbial pathogens in plant nurseries using high-throughput DNA sequencing technologies. Focus is on hardy ornamental nursery stock and fungal and bacterial non-quarantine pathogens of Rhododendron and Prunus including Phytopthora and Pseudomonas Results will guide inspection staff for the detection and regulation of plant pathogens and aid in plant pathogen surveillance in general.
  Funding Agency

  DAFM
  Date From

  2024
  Date To

  2028
• Title

  BNIPASTURES: Reducing nitrous oxide emissions from ruminant systems through accelerating nitrification inhibition in ryegrass and plantain mixed pastures.
  Summary

  This joint study focuses on accelerating the potential of Biological Nitrification Inhibition (BNI) capacity in temperate grassland species, particularly in perennial ryegrass and plantain, to reduce nitrous oxide (N2O) emissions from ruminant systems. It involves identifying sources of BNI activity in ryegrass through screening the perennial ryegrass genetic resource collection and developing screening tools for introducing BNI capacity into ryegrass cultivars. The influence of different soils, particularly those with contrasting fertility and microbial communities on BNI trait expression in perennial ryegrass will be investigated. The interactive expression of the BNI trait in mixed swards of plantain and ryegrass will be examined to determine the consequences of plant species co-existence on BNI trait expression, potentially paving the way for establishing low-N2O mixed swards in New Zealand and Ireland. Proof of function studies will determine the effect of plantain on nitrogen excretion patterns by investigating direct and indirect N2O emissions from urine under various combinations of urine volumes, nitrogen concentrations, and proportions of plantain in the diet of grazing animals. The N2O emission results will be used alongside existing Irish and NZ data and analysed in a process-based model to refine Irish and New Zealand N2O emission factors and the nitrate leaching and ammonia volatilisation fractions of urine, based on key driving variables. A comprehensive knowledge transfer implementation plan will be developed with all key stakeholders to maximise the impact of the results of the project. The study will help accelerate the potential of BNI in temperate grasslands to reduce N2O emissions, offering opportunities for sustainable, non chemical, plant-based practices to reduce GHG emissions from ruminant systems in Ireland and New Zealand.
  Funding Agency

  DAFM
  Date From

  2024
  Date To

  2028
• Title

  Resist AMR
  Summary

  Antimicrobial resistance in the environment
  Funding Agency

  TCD
  Date From

  2023
  Date To

  2027
• Title

  Nexcelsior - ash dieback disease
  Summary

  Managing the impact of ash dieback disease
  Funding Agency

  DAFM
  Date From

  2019
  Date To

  2024
• Title

  BroadGen
  Summary

  Studying the genetic diversity and resilience of commercially important broadleaved tree species in Ireland
  Funding Agency

  Teagasc
  Date From

  2022
  Date To

  2026
• Title

  Systematics of Malvaceae, Flora of Thailand
  Summary
  Funding Agency

  Thailand Government
  Date From

  2023
  Date To

  2027

Genetics, Plant biology, Microbiology, Environmental management, Agriculture, horticulture, forestry and fisheries, Electrical engineering, Forestry sciences,

• Trinity College Innovation Award - Inventors Category 2022
• Award for Best New Technology. Enterprise Ireland Innovation Arena at the National Ploughing Championships. 2018
• Most-Cited Paper Award 2005, Journal of Plant Research (as first author) 2005
• Fellowship of Trinity College Dublin 2005
• Winner of annual Journal of Plant Research Best Paper Award, 50,000 Yen (as first author) 2001
• Winner of the Ernst Mayr Award, Society of Systematic Botanists (as second author) 2004

• Botanical Society of Britain and Ireland (BSBI)

• European Expert Evaluator, Framework VII (Knowledge Based Bioeconomy, RTD Programme) 2010-
• Editor Flora of Thailand Grasses (Poaceae) 2023 onwards
• European Expert Evaluator, Framework VI (INCO-Dev-2) 2004-2008
• European Expert Evaluator, Framework V (Energy, Environment & Sustainable Development and Quality of Life RTD Programmes) 1999-2002
• Editorial Board for Plant Ecology and Diversity 2008 -2018
• Editorial Board for the Nordic Journal of Botany 2018-2020
• Editorial board for Journal of Plant Research, Japan 2002-2009