Publications and Further Research Outputs
Peer-Reviewed Publications
Magee, A.M. Aspinall, S. Rice, D.W. Cusack, B.P. Sémon, M. Perry, A.S. Stefanovi - S. Milbourne, D. Barth, S. Palmer, J.D. Gray, J.C. Kavanagh, T.A. Wolfe, K.H., Localized hypermutation and associated gene losses in legume chloroplast genomes (Genome Research (2010) 20, (1700-1710)), Genome Research, 24, (6), 2014, p1052-
Newell CA, Natesan SK, Sullivan JA, Jouhet J, Kavanagh TA, Gray JC, Exclusion of plastid nucleoids and ribosomes from stromules in tobacco and Arabidopsis., The Plant Journal : For Cell and Molecular Biology, 69, (3), 2012, p399-410
Rae L, Lao NT, Kavanagh TA, Regulation of multiple aquaporin genes in Arabidopsis by a pair of recently duplicated DREB transcription factors., Planta, 234, (3), 2011, p429-44
Magee, AM, Aspinall, S, Rice, DW, Cusack, BP, Semon, M, Perry, AS, Stefanovic, S, Milbourne, D, Barth, S, Palmer, JD, Gray, JC, Kavanagh, TA, Wolfe, KH, Localized hypermutation and associated gene losses in legume chloroplast genomes, GENOME RESEARCH, 20, 2010, p1700-1710
Yi-Hui Audrey Teh and Tony A. Kavanagh, High-level expression of Camelid nanobodies in Nicotiana benthamiana, Transgenic Research, 2010, p575-86
Lao NT, Maloney AP, Atkins JF, Kavanagh TA., Versatile Dual Reporter Gene Systems for Investigating Stop Codon Readthrough in Plants, PLoS ONE, 4, (10), 2009, pe7354
Zhou, F, Badillo-Corona, JA, Karcher, D, Gonzalez-Rabade, N, Piepenburg, K, Borchers, AM, Maloney, AP, Kavanagh, TA, Gray, JC, Bock, R, High-level expression of human immunodeficiency virus antigens from the tobacco and tomato plastid genomes., Plant Biotechnology Journal, 6, 2008, p897 - 913
Craig, W, Lenzi, P, Scotti, N, De Palma, M, Saggese, P, Carbone, V, McGrath Curran, N, Magee, AM, Medgyesy, P, Kavanagh, TA, Dix, PJ, Grillo, S, Cardi, T, Transplastomic tobacco plants expressing a fatty acid desaturase gene exhibit altered fatty acid profiles and improved cold tolerance., Transgenic research, 17, (5), 2008, p769 - 782
Puthiyaveetil, S, Kavanagh, TA, Cain, P, Sullivan, JA, Newell, CA, Gray, JC, Robinson, C, van der Giezen, M, Rogers, MB, Allen, JF, The ancestral symbiont sensor kinase CSK links photosynthesis with gene expression in chloroplasts., Proceedings of the National Academy of Sciences of the United States of America, 105, (29), 2008, p10061 - 10066
W. Craig, P. Lenzi, N. Scotti, M. De Palma, P. Saggese, V. Carbone, N. McGrath-Curran, A.M. Magee, P. Medgyesy, T.A. Kavanagh, P.J. Dix, S. Grillo and T. Cardi, The mitochondrial genome of a cytoplasmic male sterile line of perennial ryegrass (Lolium perenne L.) contains an integrated linear plasmid-like element., TAG: Theoretical and applied genetics. Theoretische und angewandte Genetik, 117, (3), 2008, p459 - 470
Magee AM, MacLean D, Gray JC, Kavanagh TA, Disruption of essential plastid gene expression caused by T7 RNA polymerase-mediated transcription of plastid transgenes during early seedling development., Transgenic research, 16, (4), 2007, p415-28
C. Sarmiento, E. Gomez, M Meier, T.A. Kavanagh and E. Truve, Cocksfoot mottle virus P1 suppresses RNA silencing in Nicotiana benthamiana and Nicotiana tabacum, Virus Research, 123, 2007, p95 - 99
S.C. Drea , N.T. Lao, K.H. Wolfe and T.A. Kavanagh, Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants, The Plant Journal, 46, 2006, p723 - 735
M.-L. Flannery, F. J. C. Mitchell, S. Coyne, T.A. Kavanagh, J.I. Burke, N. Salamin, P. Dowding and T.R. Hodkinson, Plastid genome characterisation in Brassica and Brassicaceae assessed using a new set of nine SSRs, Theoretical and Applied Genetics, 113, 2006, p1221 - 1231
J.A. Casas-Mollano, N.T. Lao and T.A. Kavanagh, Intron-regulated expression of SUVH3, an Arabidopsis Su(var)3-9 homolog, Journal of Experimental Botany, 57, 2006, p3301 - 3311
Craig, W., Gargano, D., Scotti, N., Nguyen, T.T., Lao, N.T., Kavanagh, T.A., Dix, P.J., and Cardi, T. , Direct gene transfer in potato: a comparison of particle bombardment of leaf explants and PEG-mediated transformation of protoplasts. , Plant Cell Reports, 24, 2005, p603 - 611
Nugent, G.D., Coyne, S., Nguyen, T.T., Kavanagh, T.A., and Dix, P.J. , Nuclear and plastid transformation of Brassica oleracea var. botrytis (cauliflower) using PEG-mediated uptake of DNA into protoplasts., Plant Science, 170, (1), 2005, p135 - 142
Heggie, L., Jansen, M.A.K., Burbridge, E.M., Kavanagh, T., Thorneley, R.N.F., and Dix, P.J. , Transgenic tobacco (Nicotiana tabacum L. cv. Samsun NN) plants overexpressing a synthetic HRP-C gene are altered in growth, development and susceptibility to abiotic stress. , Plant Physiology and Biochemistry, 43, 2005, p1067 - 1073
Kis M, Burbridge E, Brock IW, Heggie L, Dix PJ, Kavanagh TA , An N-terminal peptide extension results in efficient expression, but not secretion, of a synthetic horseradish peroxidase gene in transgenic tobacco , ANNALS OF BOTANY , 93, (3), 2004, p303 - 310
Magee, A.M., Horvath, E.M., and Kavanagh, T.A. , Pre-screening plastid transgene expression cassettes in Escherichia coli may be unreliable as a predictor of expression levels in chloroplast-transformed plants., Plant Science, 166, (6), 2004, p1605 - 1611
Magee, A.M., Coyne, S., Murphy, D., Horvath, E.M., Medgyesy, P., and Kavanagh, T.A. , T7 RNA polymerase-directed expression of an antibody fragment transgene in plastids causes a semi-lethal pale-green seedling phenotype., TRANSGENIC RESEARCH , 13, (4), 2004, p325 - 337
Lao NT, Long D, Kiang S, Coupland G, Shoue DA, Carpita NC, Kavanagh TA , Mutation of a family 8 glycosyltransferase gene alters cell wall carbohydrate composition and causes a humidity-sensitive semi-sterile dwarf phenotype in Arabidopsis , PLANT MOLECULAR BIOLOGY, 53, (5), 2003, p687-701
Perry AS, Brennan S, Murphy DJ, Kavanagh TA, Wolfe KH , Evolutionary re-organisation of a large operon in adzuki bean chloroplast DNA caused by inverted repeat movement , DNA RESEARCH , 9, (5), 2002, p157 - 162
Magee AM, Kavanagh TA , Plastid genes transcribed by the nucleus-encoded plastid RNA polymerase show increased transcript accumulation in transgenic plants expressing a chloroplast-localized phage T7 RNA polymerase, JOURNAL OF EXPERIMENTAL BOTANY, 53, (379), 2002, p2341 - 2349
Kirby J, Kavanagh TA, NAN fusions: a synthetic sialidase reporter gene as a sensitive and versatile partner for GUS, PLANT JOURNAL , 32, (3), 2002, p391 - 400
Drea SC, Mould RM, Hibberd JM, Gray JC, Kavanagh TA, Tissue-specific and developmental-specific expression of an Arabidopsis thaliana gene encoding the lipoamide dehydrogenase component of the plastid pyruvate dehydrogenase complex , PLANT MOLECULAR BIOLOGY , 46, (6), 2001, p705 - 715
Millen RS, Olmstead RG, Adams KL, Palmer JD, Lao NT, Heggie L, Kavanagh TA, Hibberd JM, Giray JC, Morden CW, Calie PJ, Jermiin LS, Wolfe KH , Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus , PLANT CELL, 13, (3), 2001, p645 - 658
Horvath EM, Peter SO, Joet T, Rumeau D, Cournac L, Horvath GV, Kavanagh TA, Schafer C, Peltier G, Medgyesy P, Targeted inactivation of the plastid ndhB gene in tobacco results in an enhanced sensitivity of photosynthesis to moderate stomatal closure , PLANT PHYSIOLOGY, 123, (4), 2000, p1337 - 1349
Malcuit I, de Jong W, Baulcombe DC, Shields DC, Kavanagh TA , Acquisition of multiple virulence/avirulence determinants by potato virus X (PVX) has occurred through convergent evolution rather than through recombination, VIRUS GENES, 20, (2), 2000, p165 - 172
THE EU ARABIDOPSIS GENOME PROJECT, Bevan M, Bancroft I, Bent E, Love K, Goodman H, Dean C, Bergkamp R, Dirkse W, Van Staveren M, Stiekema W, Drost L, Ridley P, Hudson SA, Patel K, Murphy G, Piffanelli P, Wedler H, Wedler E, Wambutt R, Weitzenegger T, Pohl TM, Terryn N, Gielen J, Villarroel R, De Clerck R, Van Montagu M, Lecharny A, Auborg S, Gy I, Kreis M, Lao N, Kavanagh T, Hempel S, Kotter P, Entian KD, Rieger M, Schaeffer M, Funk B, Mueller-Auer S, Silvey M, James R, Montfort A, Pons A, Puigdomenech P, Douka A, Voukelatou E, Milioni D, Hatzopoulos P, Piravandi E, Obermaier B, Hilbert H, Dusterhoft A, Moores T, Jones JDG, Eneva T, Palme K, Benes V, Rechman S, Ansorge W, Cooke R, Berger C, Delseny M, Voet M, Volckaert G, Mewes HW, Klosterman S, Schueller C, Chalwatzis N , Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana , NATURE, 391, (6666), 1998, p485 - 488
JEFFERSON RA, KAVANAGH TA, BEVAN MW , GUS FUSIONS - BETA-GLUCURONIDASE AS A SENSITIVE AND VERSATILE GENE FUSION MARKER IN HIGHER-PLANTS , EMBO JOURNAL , 6, (13), 1987, p3901 - 3907